3-Phytase A

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 3-Phytase A
  Conformer 1
(PDB)
1ska (A)
  Conformer 2
(PDB)
1skb (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 248 0.42   39 - 39   49 - 54   115 - 201   278 - 374   382 - 439
2 179 0.44   12 - 38   40 - 48   55 - 114   202 - 277   375 - 381

Sequence


           ____________________________37_________48____54_________________________________________________________114_____________ 
 1ska(A) : CDTVDLGYQCSPATSHLWGQYSPFFSLEDELSVSSKLPKDCRITLVQVLSRHGARYPTSSKSKKYKKLVTAIQANATDFKGKFAFLKTYNYTLGADDLTPFGEQQLVNSGIKFYQRYKAL 
         :                                                                                                                          
 1skb(A) : CDTVDLGYQCSPATSHLWGQYSPFFSLEDELSVSSKLPKDCRITLVQVLSRHGARYPTSSKSKKYKKLVTAIQANATDFKGKFAFLKTYNYTLGADDLTPFGEQQLVNSGIKFYQRYKAL 
           ____________________________37_________48____54_________________________________________________________114_____________ 

           ______________________________________________________________________201_______________________________________________ 
 1ska(A) : ARSVVPFIRASGSDRVIASGEKFIEGFQQAKLADPGATNRAAPAISVIIPESETFNNTLDHGVCTKFEASQLGDEVAANFTALFAPDIRARAEKHLPGVTLTDEDVVSLMDMCSFDTVAR 
         :                                                                                                                          
 1skb(A) : ARSVVPFIRASGSDRVIASGEKFIEGFQQAKLADPGATNRAAPAISVIIPESETFNNTLDHGVCTKFEASQLGDEVAANFTALFAPDIRARAEKHLPGVTLTDEDVVSLMDMCSFDTVAR 
           ______________________________________________________________________201_______________________________________________ 

           __________________________277___________________________________________________________________________________________ 
 1ska(A) : TSDASQLSPFCQLFTHNEWKKYNYLQSLGKYYGYGAGNPLGPAQGIGFTNELIARLTRSPVQDHTSTNSTLVSNPATFPLNATMYVDFSHDNSMVSIFFALGLYNGTEPLSRTSVESAKE 
         :                                                                                                                          
 1skb(A) : TSDASQLSPFCQLFTHNEWKKYNYLQSLGKYYGYGAGNPLGPAQGIGFTNELIARLTRSPVQDHTSTNSTLVSNPATFPLNATMYVDFSHDNSMVSIFFALGLYNGTEPLSRTSVESAKE 
           __________________________277___________________________________________________________________________________________ 

           ___374____381______________________________________________________________                                              
 1ska(A) : LDGYSASWVVPFGARAYFETMQCKSEKEPLVRALINDRVVPLHGCDVDKLGRCKLNDFVKGLSWARSGGNWGECF                                              
         :                                                                                                                          
 1skb(A) : LDGYSASWVVPFGARAYFETMQCKSEKEPLVRALINDRVVPLHGCDVDKLGRCKLNDFVKGLSWARSGGNWGECF                                              
           ___374____381______________________________________________________________                                              

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
3.8
Translation
(A)
0.1
Closure
(%)
79.7
Bending Residues
( green )
  37 - 43
  48 - 49
  54 - 55
  114 - 115
  201 - 202
  277 - 278
  374 - 375
  381 - 382
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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