At-Rich Dna-Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name At-Rich Dna-Binding Protein
  Conformer 1
(PDB)
1xcb (A)
  Conformer 2
(PDB)
1xcb (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 110 0.67   77 - 187
2 65 0.82   6 - 76

Sequence


           _________________________________________________________________________76_____________________________________________ 
 1xcb(A) : KVPEAAISRLITYLRILEELEAQGVHRTSSEQLGELAQVTAFQVRKDLSYFGSYGTRGVGYTVPVLKRELRHILGLNRKWGLCIVGgRLGSALADYPGFGESFELRGFFDVDPEKVGRPV 
         :                                                                                                                          
 1xcb(B) : **PEAAISRLITYLRILEELEAQGVHRTSSEQLGELAQVTAFQVRKDLSYFGS------gYTVPVLKRELRHILGLNRKWGLCIVGgRLGSALADYPGFGESFELRGFFDVDPEKVGRPV 
           _________________________________________________________________________76_____________________________________________ 

           ____________________________________________________________________________________                                     
 1xcb(A) : RGGVIEHVDLLPQRVPGRIEIALLTVPREAAQKAADLLVAAGIKGILNFAPVVLEVPKEVAVENVDFLAGLTRLSFAILNPKWR                                     
         :                                                                                                                          
 1xcb(B) : RGGVIEHVDLLPQRVPGRIEIALLTVPREAAQKAADLLVAAGIKGILNFAPVVLEVPKEVAVENVDFLAGLTRLSFAILNPKWR                                     
           ____________________________________________________________________________________                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
11.3
Translation
(A)
-0.1
Closure
(%)
76.9
Bending Residues
( green )
  76 - 77
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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