Cag-Alpha

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Cag-Alpha
  Conformer 1
(PDB)
1nlz (A)
  Conformer 2
(PDB)
1nlz (D)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 181 0.22   139 - 323
2 108 0.25   29 - 138

Sequence


           ________________________________________________________________________________________________________________________ 
 1nlz(A) : LSAEDKKFLEVERALKEAALNPLRHATEELFGDFLKeNITEICYNGNKVVWVLKNNGEWQPFDVRDRKAFSLSRLhFARCCASFKKKTIDNYENPILSSNLANGERVQIVLSPVTVNDET 
         :                                                                                                                          
 1nlz(D) : ****DKKFLEVERALKEAALNPLRHATEELFGDFLKeNITEICYNGNKVVWVLKNNGEWQPFDVRDRKAFSLSRLhFARCCASFKKKTIDNYENPILSSNLANGERVQIVLSPVTVNDET 
           ________________________________________________________________________________________________________________________ 

           _131____________________________________________________________________________________________________________________ 
 1nlz(A) : ISISIRIPSKTTYPHSFFEEQGFYNLLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIeFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRrPDRIILGEL 
         :                                                                                                                          
 1nlz(D) : ISISIRIPSKTTYPHSFFEEQGFYNLLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIeFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRrPDRIILGEL 
           _131____________________________________________________________________________________________________________________ 

           ______________________________________________________________________________                                           
 1nlz(A) : RSSEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANsSSNSAARNIKFESLIEGFKDLIDiVHINHHKQCDEFYIK*                                           
         :                                                                                                                          
 1nlz(D) : RSSEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANsSSNSAARNIKFESLIEGFKDLIDiVHINHHKQCDEFYIKH                                           
           ______________________________________________________________________________                                           

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
3.2
Translation
(A)
-0.1
Closure
(%)
85.3
Bending Residues
( green )
  131 - 146
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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