Citrate Synthase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Citrate Synthase
  Conformer 1
(PDB)
1ixe (B)
  Conformer 2
(PDB)
1ixe (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 274 0.42   5 - 220   223 - 223   318 - 374
2 92 0.33   221 - 222   224 - 317

Sequence


           ________________________________________________________________________________________________________________________ 
 1ixe(B) : VARGLEGVLFTESRMCYIDGQQGKLYYYGIPIQELAEKSSFEETTFLLLHGRLPRRQELEEFSAALARRRALPAHLLESFKRYPVSAHPMSFLRTAVSEFGMLDPTEGDISREALYEKGL 
         :                                                                                                                          
 1ixe(A) : VARGLEGVLFTESRMCYIDGQQGKLYYYGIPIQELAEKSSFEETTFLLLHGRLPRRQELEEFSAALARRRALPAHLLESFKRYPVSAHPMSFLRTAVSEFGMLDPTEGDISREALYEKGL 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________________________________________218________________________ 
 1ixe(B) : DLIAKFATIVAANKRLKEGKEPIPPREDLSHAANFLYMANGVEPSPEQARLMDAALILHAEHGFNASTFTAIAAFSTETDLYSAITAAVASLKGPRHGGANEAVMRMIQEIGTPERAREW 
         :                                                                                                                          
 1ixe(A) : DLIAKFATIVAANKRLKEGKEPIPPREDLSHAANFLYMANGVEPSPEQARLMDAALILHAEHGFNASTFTAIAAFSTETDLYSAITAAVASLKGPRHGGANEAVMRMIQEIGTPERAREW 
           _____________________________________________________________________________________________218________________________ 

           ___________________________________________________________________315__________________________________________________ 
 1ixe(B) : VREKLAKKERIMGMGHRVYKAFDPRAGVLEKLARLVAE-sKEYQILKIVEEEAGKVLNPRGIYPNVDFYSGVVYSDLGFSLEFFTPIFAVARISGWVGHILEYQELDNRLLRPGAKYVGE 
         :                                                                                                                          
 1ixe(A) : VREKLAKKERIMGMGHRVYKAFDPRAGVLEKLARLVAEhSKEYQILKIVEEEAGKVLNPRGIYPNVDFYSGVVYSDLGFSLEFFTPIFAVARISGWVGHILEYQELDNRLLRPGAKYVGE 
           ___________________________________________________________________315__________________________________________________ 

           ___________                                                                                                              
 1ixe(B) : LDVPYVPLEAR                                                                                                              
         :                                                                                                                          
 1ixe(A) : LDVPYVPLEAR                                                                                                              
           ___________                                                                                                              

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
9.5
Translation
(A)
0.2
Closure
(%)
100.0
Bending Residues
( green )
  218 - 225
  315 - 319
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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