Glutamate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Dehydrogenase
  Conformer 1
(PDB)
2tmg (C)
  Conformer 2
(PDB)
2tmg (F)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 212 0.13   198 - 409
2 192 0.05   6 - 197

Sequence


           ________________________________________________________________________________________________________________________ 
 2tmg(C) : SLYEMAVEQFNRAASLMDLESDLAEVLRRPKRVLIVEFPVRMDDGHVEVFTGYRVQHNVARGPAKGGIRYHPDVTLDEVKALAFWMTWKTAVMNLPFGGGKGGVRVDPKKLSRRELERLS 
         :                                                                                                                          
 2tmg(F) : SLYEMAVEQFNRAASLMDLESDLAEVLRRPKRVLIVEFPVRMDDGHVEVFTGYRVQHNVARGPAKGGIRYHPDVTLDEVKALAFWMTWKTAVMNLPFGGGKGGVRVDPKKLSRRELERLS 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________________________197______________________________________________ 
 2tmg(C) : RRFFREIQVIIGPYNDIPAPDVNTNADVIAWYMDEYEMNVGHTVLGIVTGKPVELGGSKGREEATGRGVKVCAGLAMDVLGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSR 
         :                                                                                                                          
 2tmg(F) : RRFFREIQVIIGPYNDIPAPDVNTNADVIAWYMDEYEMNVGHTVLGIVTGKPVELGGSKGREEATGRGVKVCAGLAMDVLGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSR 
           _______________________________________________________________________197______________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2tmg(C) : GGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELLELDVDILVPAALEGAIHAGNAERIKAKAVVEGANGPTTPEADEILSRRGILVVPDILANAGGVTVSYFEWVQDLQSFFWDL 
         :                                                                                                                          
 2tmg(F) : GGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELLELDVDILVPAALEGAIHAGNAERIKAKAVVEGANGPTTPEADEILSRRGILVVPDILANAGGVTVSYFEWVQDLQSFFWDL 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________                                                                         
 2tmg(C) : DQVRNALEKMMKGAFNDVMKVKEKYNVDMRTAAYILAIDRVAYATKKR                                                                         
         :                                                                                                                          
 2tmg(F) : DQVRNALEKMMKGAFNDVMKVKEKYNVDMRTAAYILAIDRVAYATKKR                                                                         
           ________________________________________________                                                                         

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
3.2
Translation
(A)
0.0
Closure
(%)
95.3
Bending Residues
( green )
  197 - 198
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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