Hepatocyte Nuclear Factor 6

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Hepatocyte Nuclear Factor 6
  Conformer 1
(PDB)
2d5v (B)
  Conformer 2
(PDB)
2d5v (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 77 0.55   5 - 101
2 51 0.25   102 - 152

Sequence


           ______________________________________________________________________________101_______________________________________ 
 2d5v(B) : MEEINTKEVAQRITTELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQRMSALRLpRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELST 
         :                                                                                                                          
 2d5v(A) : MEEINTKEVAQRITTELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQRMSALRLpRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELST 
           ______________________________________________________________________________101_______________________________________ 

           _______________                                                                                                          
 2d5v(B) : VSNFFMNARRRSLDK                                                                                                          
         :                                                                                                                          
 2d5v(A) : VSNFFMNARRRSLDK                                                                                                          
           _______________                                                                                                          

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.6
Translation
(A)
0.1
Closure
(%)
72.2
Bending Residues
( green )
  101 - 102
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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