Inositol-3-Phosphate Synthase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Inositol-3-Phosphate Synthase
  Conformer 1
(PDB)
1p1f (B)
  Conformer 2
(PDB)
1p1j (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 312 0.84   12 - 65   80 - 107   115 - 142   150 - 152   157 - 157   159 - 172   174 - 174   176 - 179   231 - 239   320 - 320   323 - 479   489 - 500   503 - 531
2 179 0.62   66 - 79   108 - 114   143 - 149   153 - 156   158 - 158   173 - 173   175 - 175   180 - 230   240 - 319   321 - 322   480 - 488   501 - 502

Sequence


           _______________________________________________________65____________79_________________________107____114______________ 
 1p1f(B) : ITSVKVVTDKCTYKDNELLTKYSYENAVVTKTASGRFDVTPTVQDYVFKLDLKKPEKLGIMLIGLGGNNGSTLVASVLANKHNVEFQTKEGVKQPNYFGSMTQCSTLKLGIDAEGNDVYA 
         :                                                                                                                          
 1p1j(A) : ITSVKVVTDKCTYKDNELLTKYSYENAVVTKTASGRFDVTPTVQDYVFKLDLKKPEKLGIMLIGLGGNNGSTLVASVLANKHNVEFQTKEGVKQPNYFGSMTQCSTLKLGIDAEGNDVYA 
           _______________________________________________________65____________79_________________________107____114______________ 

           ___________142____149____156_____________172____179________________________________________________230______239_________ 
 1p1f(B) : PFNSLLPMVSPNDFVVSGWDINNADLYEAMQRSQVLEYDLQQRLKAKMSLVKPLPSIYYPDFIAANQDERANNCINLDEKGNVTTRGKWTHLQRIRRDIQNFKEENALDKVIVLWTANTE 
         :                                                                                                                          
 1p1j(A) : PFNSLLPMVSPNDFVVSGWDINNADLYEAMQRSQVLEYDLQQRLKAKMSLVKPLPSIYYPDFIAANQDERANNCINLDEKGNVTTRGKWTHLQRIRRDIQNFKEENALDKVIVLWTANTE 
           ___________142____149____156_____________172____179________________________________________________230______239_________ 

           ____________________________________________________________________319_________________________________________________ 
 1p1f(B) : RYVEVSPGVNDTMENLLQSIKNDHEEIAPSTIFAAASILEGVPYINGSPQNTFVPGLVQLAEHEGTFIAGDDLKSGQTKLKSVLAQFLVDAGIKPVSIASYNHL---------------- 
         :                                                                                                                          
 1p1j(A) : RYVEVSPGVNDTMENLLQSIKNDHEEIAPSTIFAAASILEGVPYINGSPQNTFVPGLVQLAEHEGTFIAGDDLKSGQTKLKSVLAQFLVDAGIKPVSIASYNHLGNNDGYNLSAPKQFRS 
           ____________________________________________________________________319_________________________________________________ 

           ____________________________________________________________________________________________________________479____486__ 
 1p1f(B) : -------vIDDIIASNDILYNDKLGKKVDHCIVIKYMKPVGDSKVAMDEYYSELMLGGHNRISIHNVCEDSLLATPLIIDLLVMTEFCTRVSYKKVDP------kFENFYPVLTFLSYWL 
         :                                                                                                                          
 1p1j(A) : KEISKSSVIDDIIASNDILYNDKLGKKVDHCIVIKYMKPVGDSKVAMDEYYSELMLGGHNRISIHNVCEDSLLATPLIIDLLVMTEFCTRVSYKKVDPVKEDAGKFENFYPVLTFLSYWL 
           ____________________________________________________________________________________________________________479____486__ 

           _________500_________________________________                                                                            
 1p1f(B) : KAPLTRPGFHPVNGLNKQRTALENFLRLLIGLPSQNELRFEERLL                                                                            
         :                                                                                                                          
 1p1j(A) : KAPLTRPGFHPVNGLNKQRTALENFLRLLIGLPSQNELRFEERLL                                                                            
           _________500_________________________________                                                                            

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
5.7
Translation
(A)
-0.1
Closure
(%)
33.8
Bending Residues
( green )
  65 - 66
  79 - 80
  107 - 108
  114 - 115
  142 - 143
  149 - 150
  152 - 153
  156 - 159
  172 - 176
  179 - 180
  230 - 231
  239 - 240
  319 - 331
  479 - 480
  486 - 489
  500 - 503
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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