Leucine Rich Repeat Neuronal 6A

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Leucine Rich Repeat Neuronal 6A
  Conformer 1
(PDB)
2id5 (C)
  Conformer 2
(PDB)
2id5 (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 275 0.61   52 - 53   74 - 76   85 - 85   105 - 111   115 - 131   137 - 381
2 98 0.83   5 - 51   55 - 73   77 - 84   86 - 104   112 - 114   132 - 136
3 89 0.94   382 - 474

Sequence


           ________________________________________________51____________________73_76______84_________________104___110_114_______ 
 2id5(C) : GCPPRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLD 
         :                                                                                                                          
 2id5(D) : *CPPRCECSAQDRAVLCHRKRFVAVPEGIP---rLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLD 
           ________________________________________________51____________________73_76______84_________________104___110_114_______ 

           _______131__136_________________________________________________________________________________________________________ 
 2id5(C) : YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY 
         :                                                                                                                          
 2id5(D) : YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY 
           _______131__136_________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2id5(C) : LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPE 
         :                                                                                                                          
 2id5(D) : LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPE 
           ________________________________________________________________________________________________________________________ 

           _______371__________________________________________________________________________________________________________     
 2id5(C) : FVQGKEFKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLV----nGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVRS     
         :                                                                                                                          
 2id5(D) : FVQGKEFKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVR*     
           _______371__________________________________________________________________________________________________________     

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
9.1
Translation
(A)
0.1
Closure
(%)
97.6
Bending Residues
( green )
  51 - 55
  73 - 74
  76 - 77
  84 - 86
  104 - 106
  110 - 112
  114 - 116
  131 - 132
  136 - 137
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
8.3
Translation
(A)
0.7
Closure
(%)
15.0
Bending Residues
( green )
  371 - 382
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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