Maltodextrin-Binding Protein (Male178 Mutant)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Maltodextrin-Binding Protein (Male178 Mutant)
  Conformer 1
(PDB)
1mdp (2)
  Conformer 2
(PDB)
2obg (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 196 1.42   111 - 260   313 - 327   331 - 368
2 157 0.67   9 - 110   261 - 312   328 - 330

Sequence


           _________________________________________________________________________________________________________108____________ 
 1mdp(2) : KIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKD 
         :                                                                                                                          
 2obg(A) : ******LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKD 
           _________________________________________________________________________________________________________108____________ 

           ________________________________________________________________________________________________________________________ 
 1mdp(2) : LLPNPPKTWEEIPD-------PgKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKV 
         :                                                                                                                          
 2obg(A) : LLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKV 
           ________________________________________________________________________________________________________________________ 

           ________________259________________________________________________310______________327_________________________________ 
 1mdp(2) : NYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEA 
         :                                                                                                                          
 2obg(A) : NYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEA 
           ________________259________________________________________________310______________327_________________________________ 

           _______________________________________________________________________________________________________                  
 1mdp(2) : LKDAQTRITK*********************************************************************************************                  
         :                                                                                                                          
 2obg(A) : LKDAQTRITKGSSVPTNLEVVAATPTSLLISWDASYSSSVSYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAYSYYYYYYSSPISINYRT                  
           _______________________________________________________________________________________________________                  

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
39.9
Translation
(A)
-1.0
Closure
(%)
96.5
Bending Residues
( green )
  108 - 113
  259 - 261
  310 - 316
  327 - 331
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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