Adp-L-Glycero-D-Mannoheptose 6-Epimerase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Adp-L-Glycero-D-Mannoheptose 6-Epimerase
  Conformer 1
(PDB) 		1eq2 (I)
  Conformer 2
(PDB) 		1eq2 (H)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 206 0.35   3 - 170   173 - 173   175 - 175   212 - 235   280 - 292
2 86 0.53   171 - 172   174 - 174   176 - 211   236 - 279   293 - 305

Sequence


           ________________________________________________________________________________________________________________________ 
 1eq2(I) : MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDFLIQIMAGEEFGDVEAIFHEGAsSTTEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATYG 
         :                                                                                                                          
 1eq2(H) : MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDFLIQIMAGEEFGDVEAIFHEGAsSTTEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATYG 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________169______________________________________210______________________235______ 
 1eq2(I) : GRTSDFIESREYEKPLNVYGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGVSGIFNLGTGRAE 
         :                                                                                                                          
 1eq2(H) : GRTSDFIESREYEKPLNVYGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGVSGIFNLGTGRAE 
           _____________________________________________169______________________________________210______________________235______ 

           ___________________________________279____________________________                                                       
 1eq2(I) : SFQAVADATLAYHKKGQIEYIPFPDKLKGRYQAFTQADLTNLRAAGYDKPFKTVAEGVTEYMAWLN                                                       
         :                                                                                                                          
 1eq2(H) : SFQAVADATLAYHKKGQIEY----------yQAFTQADLTNLRAAGYDKPFKTVAEGVTEYMAWLN                                                       
           ___________________________________279____________________________                                                       

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		11.2
Translation
(A) 		-0.2
Closure
(%) 		96.6
Bending Residues
( green ) 		  169 - 176
  210 - 212
  235 - 236
  279 - 293
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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