Ccaat/enhancer Binding Protein Alpha

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Ccaat/enhancer Binding Protein Alpha
  Conformer 1
(PDB)
1nwq (A)
  Conformer 2
(PDB)
1nwq (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 36 0.87   283 - 318
2 20 0.51   319 - 338

Sequence


           ___________________________________318______________________                                                             
 1nwq(A) : NSNEYRVRRERNNIAVRKSRDKAKQRNVETQQKVLELTSDNDRLRKRVEQLSRELDTLRG                                                             
         :                                                                                                                          
 1nwq(C) : NSNEYRVRRERNNIAVRKSRDKAKQRNVETQQKVLELTSDNDRLRKRVEQLSRELDTLRG                                                             
           ___________________________________318______________________                                                             

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
21.9
Translation
(A)
-0.2
Closure
(%)
82.0
Bending Residues
( green )
  318 - 319
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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