Cog0147: Anthranilate/para-Aminobenzoate Synthases Component I

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Cog0147: Anthranilate/para-Aminobenzoate Synthases Component I
  Conformer 1
(PDB)
2g5f (B)
  Conformer 2
(PDB)
2g5f (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 321 0.68   27 - 43   47 - 47   60 - 137   180 - 211   225 - 230   238 - 247   250 - 406   416 - 438
2 105 0.92   19 - 26   44 - 46   48 - 59   138 - 179   212 - 224   231 - 237   248 - 249   407 - 415   439 - 447

Sequence


           __________26________36________46___________59___________________________________________________________________________ 
 2g5f(B) : **SIPMPAGVNPADLAAELAAVVTE--dEDYLLYECDGQWVLAAGVQAMVELDSDELRVIR-gVTRRQQWSGRPGAALGEAVDRLLLETDQAFGWVAFEFGVHRYGLQQRLAPHTPLARV 
         :                                                                                                                          
 2g5f(D) : SSSIPMPAGVNPADLAAELAAVVTESVDEDYLLYECDGQWVLAAGVQAMVELDSDELRVIRDGVTRRQQWSGRPGAALGEAVDRLLLETDQAFGWVAFEFGVHRYGLQQRLAPHTPLARV 
           __________26________36________46___________59___________________________________________________________________________ 

           137_______________________________________179_____________________________211__________224_228______237_______247_______ 
 2g5f(B) : FSPRTRIMVSEKEIRLFDAGIRHREAIDRLLATGVREVPQSRSVDVSDDPSGFRRRVAVAVDEIAAGRYHKVILSRCVEVPFAIDFPLTYRLGRRHNTPVRSFLLQLGGIRALGYSPELV 
         :                                                                                                                          
 2g5f(D) : FSPRTRIMVSEKEIRLFDAGIRHREAIDRLLATGVREVPQSRSVDVSDDPSGFRRRVAVAVDEIAAGRYHKVILSRCVEVPFAIDFPLTYRLGRRHNTPVRSFLLQLGGIRALGYSPELV 
           137_______________________________________179_____________________________211__________224_228______237_______247_______ 

           ________________________________________________________________________________________________________________________ 
 2g5f(B) : TAVRADGVVITEPLAGTRALGRGPAIDRLARDDLESNSKEIVEHAISVRSSLEEITDIAEPGSAAVIDFMTVRERGSVQHLGSTIRARLDPSSDRMAALEALFPAVTASGIPKAAGVEAI 
         :                                                                                                                          
 2g5f(D) : TAVRADGVVITEPLAGTRALGRGPAIDRLARDDLESNSKEIVEHAISVRSSLEEITDIAEPGSAAVIDFMTVRERGSVQHLGSTIRARLDPSSDRMAALEALFPAVTASGIPKAAGVEAI 
           ________________________________________________________________________________________________________________________ 

           _____________________________406______415____________________438___________                                              
 2g5f(B) : FRLDECPRGLYSGAVVMLSADGGLDAALTLRAAYQVGGRTWLRAGAGIIEESEPEREFEETCEKLSTLTPYLVAR                                              
         :                                                                                                                          
 2g5f(D) : FRLDECPRGLYSGAVVMLSADGGLDAALTLRAAYQVGGRTWLRAGAGIIEESEPEREFEETCEKLSTLTPYLVAR                                              
           _____________________________406______415____________________438___________                                              

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
8.1
Translation
(A)
0.1
Closure
(%)
84.4
Bending Residues
( green )
  26 - 27
  36 - 44
  46 - 48
  59 - 60
  137 - 138
  179 - 180
  211 - 212
  224 - 225
  228 - 232
  237 - 238
  247 - 253
  406 - 407
  415 - 416
  438 - 439
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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