C1r Complement Serine Protease

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name C1r Complement Serine Protease
  Conformer 1
(PDB)
1md7 (A)
  Conformer 2
(PDB)
1md8 (A)
  Window Length 15
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 223 2.53   435 - 678
2 62 0.83   365 - 434

Sequence


           ________________________________________________________________432_____________________________________________________ 
 1md7(A) : DCGQPRNLPNGDFRYTTTMGVNTYKARIQYYCHEPYYKMQTqGVYTCTAQGIWKNEQKGEKIPRCLPVCGKPVNPVE--iIGGQKAKMGNFPWQVFTNIHGRGGGALLGDRWILTAAHTL 
         :                                                                                                                          
 1md8(A) : DCGQPRNLPNGDFRYTTTMGVNTYKARIQYYCHEPYYKMQTqGVYTCTAQGIWKNEQKGEKIPRCLPVCGKPVNPVEQRiIGGQKAKMGNFPWQVFTNIHGRGGGALLGDRWILTAAHTL 
           ________________________________________________________________432_____________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1md7(A) : YPKEHEAQSNASLDVFLGHTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFG------aHDLRFVRLPVANPQACENWL 
         :                                                                                                                          
 1md8(A) : YPKEH-----aSLDVFLGHTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEKIAHDLRFVRLPVANPQACENWL 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________________________________                                          
 1md7(A) : ------dVFSQNMFCAGHPSLKQDACQGDAGGVFAVRDPNTDRWVATGIVSWGIGCSRGYGFYTKVLNYVDWIKKEME*                                          
         :                                                                                                                          
 1md8(A) : RGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSRGYGFYTKVLNYVDWIKKEMEE                                          
           _______________________________________________________________________________                                          

Morph

Morph animation in progress.
Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
21.6
Translation
(A)
0.4
Closure
(%)
99.6
Bending Residues
( green )
  432 - 455
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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