Dihydrodipicolinate Reductase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Dihydrodipicolinate Reductase
  Conformer 1
(PDB)
1yl7 (C)
  Conformer 2
(PDB)
1p9l (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 132 0.56   3 - 106   215 - 242
2 108 0.59   107 - 214

Sequence


           ______________________________________________________________________________________________________105_______________ 
 1yl7(C) : ARVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPLSLLTDGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAIGAVLSMHFAKQAA 
         :                                                                                                                          
 1p9l(A) : MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLLTDGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAIGAVLSMHFAKQAA 
           ______________________________________________________________________________________________________105_______________ 

           ________________________________________________________________________________________211_____________________________ 
 1yl7(C) : RFFDSAEVIELHHPHKADAPSGTAARTAKLIAEARKGLPPNPDATSTSLPGARGADVDGIPVHAVRLAGLVAHQEVLFGTEGETLTIRHDSLDRTSFVPGVLLAVRRIAERPGLTVGLEP 
         :                                                                                                                          
 1p9l(A) : RFFDSAEVIELHHPHKADAPSGTAARTAKLIAEARKGLPPNPDATSTSLPGARGADVDGIPVHAVRLAGLVAHQEVLFGTEGETLTIRHDSLDRTSFVPGVLLAVRRIAERPGLTVGLEP 
           ________________________________________________________________________________________211_____________________________ 

           _____                                                                                                                    
 1yl7(C) : LLDLH                                                                                                                    
         :                                                                                                                          
 1p9l(A) : LLDLH                                                                                                                    
           _____                                                                                                                    

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
32.3
Translation
(A)
1.6
Closure
(%)
89.7
Bending Residues
( green )
  105 - 111
  211 - 215
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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