Glycerol-3-Phosphate Acyltransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glycerol-3-Phosphate Acyltransferase
  Conformer 1
(PDB)
1k30 (A)
  Conformer 2
(PDB)
1iuq (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 322 0.91   5 - 187   212 - 366
2 23 0.3   188 - 211

Sequence


           ________________________________________________________________________________________________________________________ 
 1k30(A) : *SHSRKFLDVRSEEELLSCIKKETEAGKLPPNVAAGMEELYQNYRNAVIESGNPKADEIVLSNMTVALDRILLDVEDPFVFSSHHKAIREPFDYYIFGQNYIRPLIDFGNSFVGNLSLFK 
         :                                                                                                                          
 1iuq(A) : ASHSRKFLDVRSEEELLSCIKKETEAGKLPPNVAAG-eELYQNYRNAVIESGNPKADEIVLSN-tVALDRILLDVEDPFVFSSHHKAIREPFDYYIFGQNYIRPLIDFGNSFVGNLSLFK 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________________187_____________________211______________________________ 
 1k30(A) : DIEEKLQQGHNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFSIGRNLICVYSKKHMFDIPELTETKRKANTRSLKEMALLLRGGSQLIWIAPSGGRDRPDPS 
         :                                                                                                                          
 1iuq(A) : DIEEKLQQGHNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFSIGRNLICVYSKKH-fDIPELTETKRKANTRSLKE-aLLLRGGSQLIWIAPSGGRDRPDPS 
           _______________________________________________________________187_____________________211______________________________ 

           ________________________________________________________________________________________________________________________ 
 1k30(A) : TGEWYPAPFDASSVDNMRRLIQHSDVPGHLFPLALLCHDIMPPPSQVEIEIrVIAFNGAGLSVAPEISFEEIAATHKNPEEVREAYSKALFDSVAMQYNVLKTAISGKQGLGASTADVSL 
         :                                                                                                                          
 1iuq(A) : TGEWYPAPFDASSVDN-rRLIQHSDVPGHLFPLALLCHDI-pPP-------rVIAFNGAGLSVAPEISFEEIAATHKNPEEVREAYSKALFDSVA-qYNVLKTAISGKQGLGASTADVSL 
           ________________________________________________________________________________________________________________________ 

           ____                                                                                                                     
 1k30(A) : SQPW                                                                                                                     
         :                                                                                                                          
 1iuq(A) : SQPW                                                                                                                     
           ____                                                                                                                     

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
8.9
Translation
(A)
0.5
Closure
(%)
67.1
Bending Residues
( green )
  187 - 188
  211 - 212
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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