Hypothetical Abc Transporter Atp-Binding Protein Mj0796

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Hypothetical Abc Transporter Atp-Binding Protein Mj0796
  Conformer 1
(PDB)
1f3o (A)
  Conformer 2
(PDB)
1l2t (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 144 0.7   4 - 84   164 - 230
2 77 0.99   85 - 163

Sequence


           _________________________________________________________________________________83_____________________________________ 
 1f3o(A) : *IKLKNVTKTYK-gEEIIYALKNVNLNIKEGEFVSI-gPSGSGKST-lNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGA-sGEE 
         :                                                                                                                          
 1l2t(B) : MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEE 
           _______________________________________________________________________________1083_____________________________________ 

           ________________________________________163_____________________________________________________________________         
 1f3o(A) : RRKRALECLK-aELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKI-qLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGF         
         :                                                                                                                          
 1l2t(B) : RRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGF         
           _______________________________________1163_____________________________________________________________________         

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
19.5
Translation
(A)
-1.1
Closure
(%)
23.4
Bending Residues
( green )
  83 - 85
  163 - 164
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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