Hypothetical Transcriptional Regulator In Qaca 5'Region

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Hypothetical Transcriptional Regulator In Qaca 5'Region
  Conformer 1
(PDB)
1jt0 (D)
  Conformer 2
(PDB)
1jus (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 99 1.33   4 - 66   87 - 88   90 - 124
2 80 0.5   67 - 86   89 - 89   125 - 184

Sequence


           _______________________________________________________________66__________________86___________________________________ 
 1jt0(D) : NLKDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQEQWKKEQIKAKTNREKFYLYNELSLTTEYYYPLQNAIIEFYTEYYKTNSINEKMNKLEN 
         :                                                                                                                          
 1jus(D) : NLKDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQEQWKKEQIKAKTNREKFYLYNELSLTTEYYYPLQNAIIEFYTEYYKTNSINEK-nKLEN 
           _______________________________________________________________66__________________86___________________________________ 

           124_______________________________________________________________                                                       
 1jt0(D) : KYIDAYHVIFKEGNLNGEWSINDVNAVSKIAANAVNGIVTFTHEQNINERIKLMNKFSQIFLNGL*                                                       
         :                                                                                                                          
 1jus(D) : KYIDAYHVIFKEGNLNGEWSINDVNAVSKIAANAVNGIVTFTHEQNINERIKL-nKFSQIFLNGLS                                                       
           124_______________________________________________________________                                                       

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
14.1
Translation
(A)
0.8
Closure
(%)
98.7
Bending Residues
( green )
  66 - 68
  86 - 90
  124 - 125
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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