Igm-Kappa Cold Agglutinin (Light Chain)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Igm-Kappa Cold Agglutinin (Light Chain)
  Conformer 1
(PDB)
1dn0 (C)
  Conformer 2
(PDB)
1qlr (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 126 0.53   3 - 108   137 - 137   141 - 144   165 - 176   196 - 197   207 - 207
2 84 0.42   109 - 136   138 - 140   145 - 164   177 - 195   198 - 206   208 - 212

Sequence


           _________________________________________________________________________________________________________108____________ 
 1dn0(C) : EIVLTQSPATLSLSPGERATLSCGASQSVSSNYLAWYQQKPGQAPRLLIYDASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSSPLTFGGGTKVEIKRTVAAPSVFIFP 
         :                                                                                                                          
 1qlr(C) : EIVLTQSPATLSLSPGERATLSCGASQSVSSNYLAWYQQKPGQAPRLLIYDASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSSPLTFGGGTKVEIKRTVAAPSVFIFP 
           _________________________________________________________________________________________________________107____________ 

           _____________136_140_144______________161____________176________________195________206_________                          
 1dn0(C) : PSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC                          
         :                                                                                                                          
 1qlr(C) : PSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC                          
           _____________135_139_143______________160____________175________________194________205_________                          

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
3.1
Translation
(A)
-0.8
Closure
(%)
34.3
Bending Residues
( green )
  108 - 109
  136 - 138
  140 - 141
  144 - 145
  161 - 165
  176 - 177
  195 - 198
  206 - 208
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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