Acetylcholine-Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Acetylcholine-Binding Protein
  Conformer 1
(PDB)
2bys (E)
  Conformer 2
(PDB)
2br8 (E)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 149 0.61   5 - 21   33 - 57   62 - 87   91 - 147   157 - 179   201 - 205
2 48 1.83   22 - 32   58 - 61   88 - 90   148 - 156   180 - 200

Sequence


           ___________11___________________32_______________________57__61________________________87_90____________________________ 
 2bys(E) : KLHSQANLMRLKSDLFN----yPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFI 
         :                                                                                                                          
 2br8(E) : ****QANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKVDSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFI 
           ____________9___________________30_______________________55__59________________________85_88____________________________ 

           __________________________147______156____________________179__________________200________                               
 2bys(E) : PAQRLSFMCDPTGVDSEEGATCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRERR                               
         :                                                                                                                          
 2br8(E) : PAQRLSFMCDPTGVDSEEGVTCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER*                               
           __________________________145______154____________________177__________________198________                               

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
17.6
Translation
(A)
0.0
Closure
(%)
81.8
Bending Residues
( green )
  11 - 22
  32 - 33
  57 - 58
  61 - 62
  87 - 88
  90 - 91
  147 - 148
  156 - 157
  179 - 180
  200 - 201
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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