Baseplate Structural Protein Gp8

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Baseplate Structural Protein Gp8
  Conformer 1
(PDB)
1n7z (B)
  Conformer 2
(PDB)
1n8b (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 221 1.22   9 - 92   122 - 130   173 - 173   175 - 177   193 - 196   200 - 221   225 - 332
2 91 1.18   93 - 121   131 - 172   174 - 174   178 - 192   197 - 199   222 - 224

Sequence


           ____________________________________________________________________________________92__________________________121_____ 
 1n7z(B) : IYRAIVTSKFRTEK-lNFYNSIGSGPDKNTIFITFGRSEPWSSNENEVGFAPPYPTDSVLGVTD-wTH--gTVKVLPS-lDAVIPRRDWGDTRYPDPYTFRINDIVVCNSAPYNATESGA 
         :                                                                                                                          
 1n8b(B) : IYRAIVTSKFRTEKMLNFYNSIGSGPDKNTIFITFGRSEPWSSNENEVGFAPPYPTDSVLGVTDMWTHMMGTVKVLPSMLDAVIPRRDWGDTRYPDPYTFRINDIVVCNSAPYNATESGA 
           ____________________________________________________________________________________92__________________________121_____ 

           _130_______________________________________172__177____________192_196______________________221_________________________ 
 1n7z(B) : GWLVYRCLDVPDTG-cSIASLTDKDECLKLGGKWTPSARS-tPPEGRGDAEGTIEPGDGYVWEYLFEIPPDVSINRCTNEYIVVPWPEELKEDPTRWGYEDNLTWQQDDFGLIYRVKANT 
         :                                                                                                                          
 1n8b(B) : GWLVYRCLDVPDTGMCSIASLTDKDECLKLGGKWTPSARSMTPPEGRGDAEGTIEPGDGYVWEYLFEIPPDVSINRCTNEYIVVPWPEELKEDPTRWGYEDNLTWQQDDFGLIYRVKANT 
           _130_______________________________________172__177____________192_196______________________221_________________________ 

           ________________________________________________________________________________________                                 
 1n7z(B) : IRFKAYLDSVYFPEAALPGNKGFRQISIITNPLEAKAHPNDPNVKAEKDYYDPEDL-rHSGE-iY-eNRPPIIa--dQTEEINILFTF                                 
         :                                                                                                                          
 1n8b(B) : IRFKAYLDSVYFPEAALPGNKGFRQISIITNPLEAKAHPNDPNVKAEKDYYDPEDLMRHSGEMIYMENRPPIIMAMDQTEEINILFTF                                 
           ________________________________________________________________________________________                                 

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
7.8
Translation
(A)
0.0
Closure
(%)
98.5
Bending Residues
( green )
  92 - 93
  121 - 122
  130 - 131
  172 - 175
  177 - 178
  192 - 193
  196 - 197
  199 - 200
  221 - 222
  224 - 225
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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