Camp-Dependent Protein Kinase Type I-Alpha Regulatory Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Camp-Dependent Protein Kinase Type I-Alpha Regulatory Chain
  Conformer 1
(PDB)
1rl3 (A)
  Conformer 2
(PDB)
1rl3 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 133 0.73   111 - 133   137 - 194   197 - 236   241 - 242   251 - 257   261 - 263
2 116 1.45   134 - 136   195 - 196   237 - 240   243 - 250   258 - 260   264 - 359

Sequence


           ______________________133__________________________________________________________194__________________________________ 
 1rl3(A) : ASYVRKVIPKDYKTMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDS 
         :                                                                                                                          
 1rl3(B) : ASYVRKVIPKDYKTMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDS 
           ______________________533__________________________________________________________594__________________________________ 

           _____236_240_______250____257___263_____________________________________________________________________________________ 
 1rl3(A) : YRRILMGSTLRKRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALLMNRPRAATVVARGPLKCVKL 
         :                                                                                                                          
 1rl3(B) : YRRILMGSTLRKRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALLMNRPRAATVVARGPLKCVKL 
           _____636_640_______650____657___663_____________________________________________________________________________________ 

           ____________________________                                                                                             
 1rl3(A) : DRPRFERVLGPCSDILKRNIQQYNSFVS                                                                                             
         :                                                                                                                          
 1rl3(B) : DRPRFERVLGPCSDILKRN*********                                                                                             
           ____________________________                                                                                             

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
10.4
Translation
(A)
0.4
Closure
(%)
100.0
Bending Residues
( green )
  133 - 134
  136 - 137
  194 - 197
  236 - 237
  240 - 243
  250 - 255
  257 - 258
  260 - 261
  263 - 264
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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