1-Deoxy-D-Xylulose-5-Phosphate Reductoisomerase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 1-Deoxy-D-Xylulose-5-Phosphate Reductoisomerase
  Conformer 1
(PDB)
1k5h (B)
  Conformer 2
(PDB)
1q0q (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 160 0.93   101 - 102   124 - 126   129 - 133   150 - 185   227 - 328   334 - 335   367 - 370   377 - 380   385 - 387
2 137 0.59   3 - 100   103 - 123   127 - 128   134 - 149
3 90 1.52   186 - 226   329 - 333   336 - 366   371 - 376   381 - 384   388 - 394

Sequence


           _________________________________________________________________________________________________100____________________ 
 1k5h(B) : MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTEVLSGQQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTI 
         :                                                                                                                          
 1q0q(A) : MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTEVLSGQQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTI 
           _________________________________________________________________________________________________100____________________ 

           123_______133_____________149_________________________________185______________________________________226______________ 
 1k5h(B) : LLANKESLVTCGRLFMDAVKQSKAQLLPVDSEHNAIFQSLPQPIQHNLGYADLEQNGVVSILLTGSGGPFRETPLRDLATMTPDQACRHPN----rKISVDSATMMNKGLEYIEARWLFN 
         :                                                                                                                          
 1q0q(A) : LLANKESLVTCGRLFMDAVKQSKAQLLPVDSEHNAIFQSLPQPIQHNLGYADLEQNGVVSILLTGSGGPFRETPLRDLATMTPDQACRHPNWSMGRKISVDSATMMNKGLEYIEARWLFN 
           123_______133_____________149_________________________________185______________________________________226______________ 

           __________________________________________________________________________________325_____333___________________________ 
 1k5h(B) : ASASQMEVLIHPQSVIHSMVRYQDGSVLAQLGEPDMRTPIAHTMAWPNRVNSGVKPLDFCKLSALTFAAPDYDRYPCLKLAMEAFEQGQAATTALNAANEITVAAFLAQQIRFTDIAALN 
         :                                                                                                                          
 1q0q(A) : ASASQMEVLIHPQSVIHSMVRYQDGSVLAQLGEPDMRTPIAHTMAWPNRVNSGVKPLDFCKLSALTFAAPDYDRYPCLKLAMEAFEQGQAATTALNAANEITVAAFLAQQIRFTDIAALN 
           __________________________________________________________________________________325_____333___________________________ 

           ___366_______376_380_384______________                                                                                   
 1k5h(B) : LSVLEKMD-rEPQCVDDVLSVDANAREVARKEVMRL**                                                                                   
         :                                                                                                                          
 1q0q(A) : LSVLEKMDMREPQCVDDVLSVDANAREVARKEVMRLAS                                                                                   
           ___366_______376_380_384______________                                                                                   

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
14.6
Translation
(A)
0.0
Closure
(%)
98.8
Bending Residues
( green )
  100 - 106
  123 - 130
  133 - 144
  149 - 150
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
14.3
Translation
(A)
0.6
Closure
(%)
92.0
Bending Residues
( green )
  185 - 186
  226 - 227
  325 - 329
  333 - 336
  366 - 367
  370 - 371
  376 - 377
  380 - 381
  384 - 385
  387 - 388
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Shear

PyMOL Script

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