Flp Recombinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Flp Recombinase
  Conformer 1
(PDB)
1flo (B)
  Conformer 2
(PDB)
1p4e (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 375 1.1   4 - 106   138 - 420
2 21 3.43   107 - 137

Sequence


           ______________________________________________________________________________________________________106_______________ 
 1flo(B) : PQFDILCKTPPKVLVRQFVERFERPSGEKIALCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYYGQKHQSDITDIVS 
         :                                                                                                                          
 1p4e(D) : SQFDILCKTPPKVLVRQFVERFERPSGEKIASCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPY-----NsDITDIVS 
           ______________________________________________________________________________________________________106_______________ 

           ________137_____________________________________________________________________________________________________________ 
 1flo(B) : SLQLQFESkGNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLD 
         :                                                                                                                          
 1p4e(D) : SLQLQFESSgNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLD 
           ________137_____________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1flo(B) : EFLRNSEPVLKRVNRTGNSSSNKQEYQLLKDNLVRSYNKALKKNAPYSIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNWSDKR--------tHQITAIPDHYFALVSRYYAYDPI 
         :                                                                                                                          
 1p4e(D) : EFLRNSEPVLKRVNRTGN--sNKQEYQLLKDNLVRSYNKALKKNAPYPIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNFSDKRASAVARTTtHQITAIPDHYFALVSRYYAYDPI 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________                                                                 
 1flo(B) : SKEMIALKDETNPIEEWQHIEQLKGSAEGSIRYPAWNGIISQEVLDYLSSYINRRI                                                                 
         :                                                                                                                          
 1p4e(D) : SKEMIALKDETNPIEEWQHIEQLKGSAEGSIRYPAWNGIISQEVLDYLSSYINRR*                                                                 
           ________________________________________________________                                                                 

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
45.0
Translation
(A)
-1.5
Closure
(%)
99.5
Bending Residues
( green )
  106 - 107
  137 - 144
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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