Hla Class II Histocompatibility Antigen

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Hla Class II Histocompatibility Antigen
  Conformer 1
(PDB)
1d5x (A)
  Conformer 2
(PDB)
1fv1 (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 89 0.55   7 - 10   24 - 32   44 - 45   89 - 114   118 - 138   148 - 166   172 - 179
2 84 0.54   11 - 23   33 - 43   46 - 88   115 - 117   139 - 147   167 - 171

Sequence


           ______10___________23_______32_________43___________________________________________88_______________________114________ 
 1d5x(A) : EEHVIIQAEFYLNPDQSGEFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWL 
         :                                                                                                                          
 1fv1(D) : *EHVIIQAEFYLNPDQSGEFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWL 
           ______10___________23_______32_________43___________________________________________88_______________________114________ 

           _____________138______147________________166__171__________                                                              
 1d5x(A) : RNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRVEHWGLDEPLLKHWEFD                                                              
         :                                                                                                                          
 1fv1(D) : RNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRVEHWGLDEPLLKHWEFD                                                              
           _____________138______147________________166__171__________                                                              

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.3
Translation
(A)
0.1
Closure
(%)
91.3
Bending Residues
( green )
  10 - 11
  23 - 24
  32 - 33
  43 - 46
  88 - 89
  114 - 115
  117 - 118
  138 - 139
  147 - 148
  166 - 167
  171 - 172
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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