Hypothetical Protein Ph1313

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Hypothetical Protein Ph1313
  Conformer 1
(PDB)
1vbk (A)
  Conformer 2
(PDB)
1vbk (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 203 0.63   3 - 76   166 - 305
2 89 0.22   77 - 165

Sequence


           __________________________________________________________________________76____________________________________________ 
 1vbk(A) : MNVVIVRYGEIGTKSRQTRSWFEKILMNNIREALVTEEVPYKEIFSRHGRIIVKTNSPKEAANVLVRVFGIVSISPAMEVEASLEKINRTALLMFRKKAKEVGKERPKFRVTARRITKEF 
         :                                                                                                                          
 1vbk(B) : MNVVIVRY-----kSRQTRSWFEKILMNNIREALVTEEVPYKEIFSRHGRIIVKTNSPKEAANVLVRVFGIVSISPAMEVEASLEKINRTALLMFRKKAKEVGKERPKFRVTARRITKEF 
           __________________________________________________________________________76____________________________________________ 

           ________________________________________163_____________________________________________________________________________ 
 1vbk(A) : PLDSLEIQAKVGEYILNNENCEVDLKNYDIEIGIEIMQGKAYIYTEKIKGWGGLPIGTEGRMIGILHDELSALAIFLMMKRGVEVIPVYIGKDDKNLEKVRSLWNLLKRYSYGSKGFLVV 
         :                                                                                                                          
 1vbk(B) : PLDSLEIQAKVGEYILNNENCEVDLKNYDIEIGIEIMQGKAYIYTEKIKGWGGLPIGTEGRMIGILHDELSALAIFLMMKRGVEVIPVYIGKDDKNLEKVRSLWNLLKRYSYGSKGFLVV 
           ________________________________________163_____________________________________________________________________________ 

           ___________________________________________________________________                                                      
 1vbk(A) : AESFDRVLKLIRDFGVKGVIKGLRPNDLNSEVSEITEDFKMFPVPVYYPLIALPEEYIKSVKERLGL                                                      
         :                                                                                                                          
 1vbk(B) : AESFDRVLKLIRDFGVKGVIKGLRP------vSEITEDFKMFPVPVYYPLIALPEEYIKSVKERLGL                                                      
           ___________________________________________________________________                                                      

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
8.4
Translation
(A)
-0.2
Closure
(%)
99.0
Bending Residues
( green )
  76 - 77
  163 - 166
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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