Hypothetical Upf0244 Protein Vc0702

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Hypothetical Upf0244 Protein Vc0702
  Conformer 1
(PDB)
1zwy (C)
  Conformer 2
(PDB)
1zwy (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 139 0.67   13 - 122   149 - 180
2 22 0.55   123 - 148

Sequence


           ___________________________________________________________________________________________________________122__________ 
 1zwy(C) : VrKIIIASQNPAKVNAVRSAFSTVFPDQEWEFIGVSVPSEVADQPsDEETKQGALNRVRNAKQRHPGAEYYVGLEAGIEENKTFAWiVESDQQRGESRSACLlPPLVLERLR---eLGDV 
         :                                                                                                                          
 1zwy(D) : *RKIIIASQNPAKVNAVRSAFSTVFPDQEWEFIGVSVPSEVADQPsDEETKQGALNRVRNAKQRHPGAEYYVGLEAGIEENKTFAWiVESDQQRGESRSACLlPPLVLERLRQAKELGDV 
           ___________________________________________________________________________________________________________122__________ 

           ____________148___________________________________                                                                       
 1zwy(C) : dEVFGTENIKQKGGAIGLLTRHHLTRSTVYHQALILALIPFINPEHYPSA                                                                       
         :                                                                                                                          
 1zwy(D) : dEVFGTENIKQKGGAIGLLTRHHLTRSTVYHQALILALIPFINPEHYPS*                                                                       
           ____________148___________________________________                                                                       

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
18.8
Translation
(A)
0.1
Closure
(%)
99.5
Bending Residues
( green )
  122 - 123
  148 - 156
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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