Hypothetical Protein Ph0226

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Hypothetical Protein Ph0226
  Conformer 1
(PDB)
1ve3 (B)
  Conformer 2
(PDB)
1ve3 (A)
  Window Length 15
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 174 0.36   9 - 139   170 - 220
2 20 3.1   141 - 169

Sequence


           ________________________________________________________________________________________________________________________ 
 1ve3(B) : GFKEYYRVFPTYTDINSQEYRSRIETLEPLLkYkKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDiRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQV 
         :                                                                                                                          
 1ve3(A) : GFKEYYRVFPTYTDINSQEYRSRIETLEPLLkYkKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDiRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQV 
           ________________________________________________________________________________________________________________________ 

           ________135______________________________169__________________________________________________________                   
 1ve3(B) : FKEVRRVLKPSGKFIyFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRFNVWGKTGVELLAKLYFTKEAEEKVGNYSYLTVYNPK                   
         :                                                                                                                          
 1ve3(A) : FKEVRRVLKPSGKFIyFTDLRELLPRLKE---------iSKVIPDQEERTVVIEF-----sFRVRFNVWGKTGVELLAKLYFTKEAEEKVGNYSYLTVYNPK                   
           ________135______________________________169__________________________________________________________                   

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
38.6
Translation
(A)
0.1
Closure
(%)
29.7
Bending Residues
( green )
  135 - 141
  169 - 187
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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