Hypothetical Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Hypothetical Protein
  Conformer 1
(PDB)
1rki (A)
  Conformer 2
(PDB)
1rki (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 64 1.18   3 - 6   20 - 37   42 - 54   67 - 95
2 29 1.14   7 - 19   38 - 41   55 - 66

Sequence


           _____6___________19________________37__41___________54__________66___________________________________                    
 1rki(A) : MKKHIIIKTIPKKEEIISRDLCDCIYYYDNSVICKPIGPSKVYVSTSLENLEKCLQLHYFKKLVKNIEIFDEVHNSKPNCDKCLIVEIGGVYFVRRVNGVP                    
         :                                                                                                                          
 1rki(B) : MKKHIIIKTIPKKEEIISRDLCDCIYYYDNSVICKPIGPSKVYVSTSLENLEKCLQLHYFKKLVKNIEIFDEVHNSKPNCDKCLIVEIGGVYFVRRV****                    
           _____6___________19________________37__41___________54__________66___________________________________                    

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
17.6
Translation
(A)
0.0
Closure
(%)
76.0
Bending Residues
( green )
  6 - 7
  19 - 20
  37 - 39
  41 - 42
  54 - 55
  66 - 67
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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