Igg1 Fab Fragment

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Igg1 Fab Fragment
  Conformer 1
(PDB)
1igc (H)
  Conformer 2
(PDB)
2aab (H)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 119 2.02   3 - 122
2 97 1.07   123 - 219

Sequence


           ________________________________________________________________________________________________________________________ 
 1igc(H) : DVQLVESGGGLVQPGGSRKLSCAASGFTFSSFGMHWVRQAPEKGLEWVAYISSGSSTLHYADTVKGRFTISRDNPKNTLFLQMTSLRSEDTGMYYCARWGNYPYYAM----DYWGQGTSV 
         :                                                                                                                          
 2aab(H) : DVQLVESGGGLVQPGGSRKLSCAASGFTFSSFGMHWVRQAPEKGLEWVAYISSDSSNIYYADTVKGRFTISRDNPKNTLFLQMTSLRSEDTAMYYCAR-SNYVGYHVRWYFDVWGAGTTV 
           ________________________________________________________________________________________________________________________ 

           ___122____________________________________________________________________________________________________               
 1igc(H) : TVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPRDC               
         :                                                                                                                          
 2aab(H) : TVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRD*               
           ___115____________________________________________________________________________________________________               

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
44.0
Translation
(A)
-0.7
Closure
(%)
97.5
Bending Residues
( green )
  122 - 123
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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