Interstitial Collagenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Interstitial Collagenase
  Conformer 1
(PDB)
1su3 (B)
  Conformer 2
(PDB)
1su3 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 213 0.54   34 - 241   246 - 270
2 197 0.45   242 - 245   271 - 463

Sequence


           ________________________________________________________________________________________________________________________ 
 1su3(B) : VDLVQKYLEKYYNLKsGPVVEKLKQMQEFFGLKVTGKPDAETLKVMKQPRCGVPDVApRWEQTHLTYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDHR 
         :                                                                                                                          
 1su3(A) : *DLVQKYLEKYYNLK-gPVVEKLKQMQEFFGLKVTGKPDAETLKVMKQPRCGVPDVApRWEQTHLTYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDHR 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________________241____________________264_________________________ 
 1su3(B) : DNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFREYNLHRVAAHELGHSLGLSHSTDIGALMYPSYTFSGDVQLAQDDIDGIQAIYGRSQNPVQPIGPQTPKACDSKLTFDAITT 
         :                                                                                                                          
 1su3(A) : DNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFREYNLHRVAAHELGHSLGLSHSTDIGALMYPSYTFSGDVQLAQDDIDGIQAIYGRSQNPVQPIGPQTPKACDSKLTFDAITT 
           _____________________________________________________________________241____________________264_________________________ 

           ________________________________________________________________________________________________________________________ 
 1su3(B) : IRGEVMFFKDRFYMRTNPFYPEVELNFISVFWPQLPNGLEAAYEFADRDEVRFFKGNKYWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVANKYWRYDEYKRSMDP 
         :                                                                                                                          
 1su3(A) : IRGEVMFFKDRFYMRTNPFYPEVELNFISVFWPQLPNGLEAAYEFADRDEVRFFKGNKYWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVANKYWRYDEYKRSMDP 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________                                                                
 1su3(B) : GYPKMIAHDFPGIGHKVDAVFMKDGFFYFFHGTRQYKFDPKTKRILTLQKANSWFN*                                                                
         :                                                                                                                          
 1su3(A) : GYPKMIAHDFPGIGHKVDAVFMKDGFFYFFHGTRQYKFDPKTKRILTLQKANSWFNC                                                                
           _________________________________________________________                                                                

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.4
Translation
(A)
0.2
Closure
(%)
21.0
Bending Residues
( green )
  241 - 246
  264 - 273
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

Download and extract PyMOL PML script file Download