Abc Transporter Periplasmic Peptide-Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Abc Transporter Periplasmic Peptide-Binding Protein
  Conformer 1
(PDB)
4qfk (A)
  Conformer 2
(PDB)
4qfl (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 279 0.91   32 - 267   273 - 289   507 - 532
2 222 1.59   268 - 272   290 - 506

Sequence


           ________________________________________________________________________________________________________________________ 
 4qfk(A) : *GLVYCAEANPVSFNPQVTTTGSTIDIIANQLYDRLISIDPVTAEFKSELATDWKISKDGKSVTFTLRKGVKFHTTAYFTPTREFNADDVIFTFSRLFDVYNPYHFVGDANYPYFQSVGI 
         :                                                                                                                          
 4qfl(A) : QGLVYCAEANPVSFNPQVTTTGSTIDIIANQLYDRLISIDPVTAEFKSELATDWKISKDGKSVTFTLRKGVKFHTTAYFTPTREFNADDVIFTFSRLFDVYNPYHFVGDANYPYFQSVGI 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________________________________________________________________________266__ 
 4qfk(A) : DQLIRKIVRVSDHQVRFELFNAESSFLANMATDFAVVLSKEYAMALKANNQENLFDQYPVGTGPYIYKEYRRDHLVRFYKNADYWKHEVALEQLVYDITPNGTTRIAKILTKECDVTAHP 
         :                                                                                                                          
 4qfl(A) : DQLIRKIVRVSDHQVRFELFNAESSFLANMATDFAVVLSKEYAMALKANNQENLFDQYPVGTGPYIYKEYRRDHLVRFYKNADYWKHEVALEQLVYDITPNGTTRIAKILTKECDVTAHP 
           ___________________________________________________________________________________________________________________266__ 

           _______________286______________________________________________________________________________________________________ 
 4qfk(A) : SSAQLSILAQRDDINVERETNLNIGYWAFNTERPPFDNLKVRQALVHAIDIEKIMQAVYYGNGLRARSILPPTSWAFEPQKNMPIFDPQLAKKLLTEAGYEKGFDMSIWAMPVSRIYNPN 
         :                                                                                                                          
 4qfl(A) : SSAQLSILAQRDDINVERETNLNIGYWAFNTERPPFDNLKVRQALVHAIDIEKIMQAVYYGNGLRARSILPPTSWAFEPQKNMPIFDPQLAKKLLTEAGYEKGFDMSIWAMPVSRIYNPN 
           _______________286______________________________________________________________________________________________________ 

           __________________________________________________________________________________________________________________505___ 
 4qfk(A) : ARKMAELMQSDLRKIGVNVNIVEYEWNTFIQRIGEHRHDSVLLGWAADTPDPDNFFSPLLSCTATFSGKNPANWCNPEFDLLLTKALDTTDLNLRKQYYDAAQSMIIEQLPLYPIAHGMR 
         :                                                                                                                          
 4qfl(A) : ARKMAELMQSDLRKIGVNVNIVEYEWNTFIQRIGEHRHDSVLLGWAADTPDPDNFFSPLLSCTATFSGKNPANWCNPEFDLLLTKALDTTDLNLRKQYYDAAQSMIIEQLPLYPIAHGMR 
           __________________________________________________________________________________________________________________505___ 

           ___________________________                                                                                              
 4qfk(A) : FQASSADVEGITLGPFGAISLANARK*                                                                                              
         :                                                                                                                          
 4qfl(A) : FQASSADVEGITLGPFGAISLANARKK                                                                                              
           ___________________________                                                                                              

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
38.3
Translation
(A)
-0.1
Closure
(%)
57.6
Bending Residues
( green )
  266 - 279
  286 - 291
  505 - 508
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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