Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20)
  Conformer 1
(PDB)
3app  
  Conformer 2
(PDB)
2web (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 284 0.23   5 - 44   51 - 69   84 - 105   117 - 319
2 31 0.66   45 - 50   70 - 83   106 - 116

Sequence


           __________________________________________44____50_________________69____________83___________________105________116____ 
 3app    : AASGVATNTPTANDEEYITPVTIGGTTLNLNFDTGSADLWVFSTELPASQQSGHSVYNPSATGKELSGYTWSISYGDGSSASGNVFTDSVTVGGVTAHGQAVQAAQQISAQFQQDTNNDG 
         :                                                                                                                          
 2web(A) : AASGVATNTPTANDEEYITPVTIGGTTLNLNFDTGSADLWVFSTELPASQQSGHSVYNPSATGKELSGYTWSISYGDGSSASGNVFTDSVTVGGVTAHGQAVQAAQQISAQFQQDTNNDG 
           __________________________________________44____50_________________69____________83___________________105________116____ 

           ________________________________________________________________________________________________________________________ 
 3app    : LLGLAFSSINTVQPQSQTTFFDTVKSSLAQPLFAVALKHQQPGVYDFGFIDSSKYTGSLTYTGVDNSQGFWSFNVDSYTAGSQSGDGFSGIADTGTTLLLLDDSVVSQYYSQVSGAQQDS 
         :                                                                                                                          
 2web(A) : LLGLAFSSINTVQPQSQTTFFDTVKSSLAQPLFAVALKHQQPGVYDFGFIDSSKYTGSLTYTGVDNSQGFWSFNVDSYTAGSQSGDGFSGIADTGTTLLLLDDSVVSQYYSQVSGAQQDS 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________________________________________                                      
 3app    : NAGGYVFDCSTNLPDFSVSISGYTATVPGSLINYGPSGDGSTCLGGIQSNSGIGFSIFGDIFLKSQYVVFDSDGPQLGFAPQA                                      
         :                                                                                                                          
 2web(A) : NAGGYVFDCSTNLPDFSVSISGYTATVPGSLINYGPSGDGSTCLGGIQSNSGIGFSIFGDIFLKSQYVVFDSDGPQLGFAPQA                                      
           ___________________________________________________________________________________                                      

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.6
Translation
(A)
-0.1
Closure
(%)
96.2
Bending Residues
( green )
  44 - 45
  50 - 51
  69 - 70
  83 - 84
  105 - 106
  116 - 117
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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