Beta-Actin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Beta-Actin
  Conformer 1
(PDB)
1nwk (A)
  Conformer 2
(PDB)
1d4x (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 322 0.9   8 - 33   71 - 76   79 - 369
2 27 0.68   34 - 70   77 - 78

Sequence


           ____________________________33_______________________________70____76___________________________________________________ 
 1nwk(A) : **TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPR--------sYVGDEAQSKRGILTLKYPIE-gIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETF 
         :                                                                                                                          
 1d4x(A) : EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVgQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 
           ____________________________33_______________________________70____76___________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1nwk(A) : NVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQV 
         :                                                                                                                          
 1d4x(A) : NTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQV 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1nwk(A) : ITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGP 
         :                                                                                                                          
 1d4x(A) : ITVGNERFRCPEAMFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 
           ________________________________________________________________________________________________________________________ 

           ________                                                                                                                 
 1nwk(A) : SIVH****                                                                                                                 
         :                                                                                                                          
 1d4x(A) : SIVHRKCF                                                                                                                 
           ________                                                                                                                 

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
12.8
Translation
(A)
0.6
Closure
(%)
51.9
Bending Residues
( green )
  33 - 34
  70 - 71
  76 - 79
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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