Actin Alpha 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Actin Alpha 1
  Conformer 1
(PDB)
1t44 (A)
  Conformer 2
(PDB)
2ff3 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 332 0.57   8 - 34   69 - 373
2 22 0.37   35 - 68

Sequence


           __________________________33____________________67______________________________________________________________________ 
 1t44(A) : TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPdSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQ 
         :                                                                                                                          
 2ff3(B) : TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPdSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQ 
           __________________________33____________________67______________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1t44(A) : AVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRC 
         :                                                                                                                          
 2ff3(B) : AVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRC 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________________________________________________________________   
 1t44(A) : PETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF   
         :                                                                                                                          
 2ff3(B) : PETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF   
           ______________________________________________________________________________________________________________________   

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
17.5
Translation
(A)
0.5
Closure
(%)
38.5
Bending Residues
( green )
  33 - 35
  67 - 69
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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