Adp-Dependent Glucokinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Adp-Dependent Glucokinase
  Conformer 1
(PDB)
1gc5 (A)
  Conformer 2
(PDB)
1ua4 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 326 1.41   13 - 40   123 - 183   213 - 443   450 - 462
2 117 1.06   41 - 122   184 - 212   444 - 449

Sequence


           ______________________________________40___________________________________________________________________________118__ 
 1gc5(A) : MKESLKDRIRLWKRLYVNAFENALNAIPNVKGVLLAYNTNIDAIKYLDADDLEKRVTEKGKEKVFEIIENPPEKISSIEELLGGILRSIKLGKAMEWFVESEEVRRYLREWGWDELRIGG 
         :                                                                                                                          
 1ua4(A) : *********PTWEELYKNAIEKAIKSVPKVKGVLLGYNTNIDAIKYLDSKDLEERIIKAGKEEVIKYSEELPDKINTVSQLLGSILWSIRRGKAAELFVESCPVRFYMKRWGWNELRMGG 
           ______________________________________32___________________________________________________________________________110__ 

           ____________________________________________________________183__________________________212____________________________ 
 1gc5(A) : QAGIMANLLGGVYRIPTIVHVPQNPKLQAELFVDGPIYVPVFEGNKLKLVHPKDAIAEEEELIHYIYEFPRGFQVFDVQAPRENRFIANADDYNARVYMRREFREGFEEITRNVELAIIS 
         :                                                                                                                          
 1ua4(A) : QAGIMANLLGGVYGVPVIVHVPQLSRLQANLFLDGPIYVPTLENGEVKLIHPKEFSGDEENCIHYIYEFPRGFRVFEFEAPRENRFIGSADDYNTTLFIREEFRESFSEVIKNVQLAILS 
           ____________________________________________________________175__________________________204____________________________ 

           ________________________________________________________________________________________________________________________ 
 1gc5(A) : GLQVLKEYYPDGTTYKDVLDRVESHLNILNRYNVKSHFEFAYTANRRVREALVELLPKFTSVGLNEVELASIMEIIGDEELAKEVLEGH----IFSVIDAMNVLMDETGIERIHFHTYGY 
         :                                                                                                                          
 1ua4(A) : GLQALTK-----ENYKEPFEIVKSNLEVLNEREIPVHLEFAFTPDEKVREEILNVLGMFYSVGLNEVELASIMEILGEKKLAKELL-AHDPVDPIAVTEAMLKLAKKTGVKRIHFHTYGY 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________________________________________442____449__________________          
 1gc5(A) : YLALTQYRGEEVRDALLFASLAAAAKAMKGNLERIEQIRDALSVPTNERAIVLEEELEKEFTEFENGLIDMVDRQLAFVPTKIVASPKSTVGIGDTISSSAFVSEFGMRKR          
         :                                                                                                                          
 1ua4(A) : YLALTEYKGEHVRDALLFAALAAAAKAMKGNITSLEEIREATSVPVNEKATQVEEKLRAEYG-IKEGIGEVEGYQIAFIPTKIVAKPKSTVGIGDTISSSAFIGEFSFTL*          
           ___________________________________________________________________________________431____438__________________          

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
20.9
Translation
(A)
0.2
Closure
(%)
100.0
Bending Residues
( green )
  40 - 41
  118 - 123
  183 - 184
  212 - 213
  442 - 445
  449 - 450
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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