Adp-Ribosylation Factor 6

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Adp-Ribosylation Factor 6
  Conformer 1
(PDB)
1e0s (A)
  Conformer 2
(PDB)
2j5x (A)
  Window Length 15
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 130 2.96   18 - 29   50 - 167
2 20 5.77   30 - 49

Sequence


           __________________________29_________________48_________________________________________________________________________ 
 1e0s(A) : GKVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFA 
         :                                                                                                                          
 2j5x(A) : *********NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFA 
           __________________________29_________________48_________________________________________________________________________ 

           _____________________________________________________                                                                    
 1e0s(A) : NKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK                                                                    
         :                                                                                                                          
 2j5x(A) : NKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK                                                                    
           _____________________________________________________                                                                    

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
108.3
Translation
(A)
2.5
Closure
(%)
99.9
Bending Residues
( green )
  29 - 31
  48 - 64
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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