Antithrombin-III

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Antithrombin-III
  Conformer 1
(PDB)
1t1f (A)
  Conformer 2
(PDB)
1nq9 (L)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 382 2.63   9 - 379   402 - 426
2 20 5.97   380 - 401

Sequence


           ________________________________________________________________________________________________________________________ 
 1t1f(A) : GSPVDICTAKPRDIPMNPMCIYR---eQKIPEATNRRVWELSKANSRFATTFYQHLADSKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQIHFFFAKLNCRL 
         :                                                                                                                          
 1nq9(L) : ***VDICTAKPRDIPMNPMCIYRSPsEQKIPEATNRRVWELSKANSRFATTFYQHLADSKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQIHFFFAKLNCRL 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1t1f(A) : YRKANKASKLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAINKWVSNKTEGRITDVIPSEAINELTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGESCSAS 
         :                                                                                                                          
 1nq9(L) : YRK--kSSKLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAINKWVSNKTEGRITDVIPSEAINELTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGESCSAS 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1t1f(A) : MMYQEGKFRYRRVAEGTQVLELPFKGDDITMVLILPKPEKSLAKVEKELTPEVLQEWLDELEEMMLCVHMPRFRIEDGFSLKEQLQDMGLVDLFSPEKSKLPGIVAEGRDDLYVSDAFHK 
         :                                                                                                                          
 1nq9(L) : MMYQEGKFRYRRVAEGTQVLELPFKGDDITMVLILPKPEKSLAKVEKELTPEVLQEWLDELEEMMLVVHMPRFRIEDGFSLKEQLQDMGLVDLFSPEKSKLPGIVAEGRDDLYVSDAFHK 
           ________________________________________________________________________________________________________________________ 

           _____378__________________401_________________________________                                                           
 1t1f(A) : AFLEVNEEGSEAAASTAVVIAGRSLNPNRVCFKANRPFLVFIREVPLNTIIFMGRVANPCVK                                                           
         :                                                                                                                          
 1nq9(L) : AFLEVNEEGSEAAASTAVVIAGRSLNPN--tFKANRPFLVFIREVPLNTIIFMGRVANPC**                                                           
           _____378__________________401_________________________________                                                           

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
133.9
Translation
(A)
-5.4
Closure
(%)
96.1
Bending Residues
( green )
  378 - 380
  401 - 409
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

Chart image not calculated - the graph is too big to count connection types.

PyMOL Script

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