Argonaute

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Argonaute
  Conformer 1
(PDB)
3hjf (A)
  Conformer 2
(PDB)
3dlb (A)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 199 1.38   9 - 174   267 - 308
2 83 1.5   178 - 265
3 318 4.05   315 - 636

Sequence


           ________________________________________________________________________________________________________________________ 
 3hjf(A) : HLGKTEVFLNRFALRPLNPEELRPWRLEVVLDPPPGREEVYPLLAQVARRAGGVTVRMGDGLASWSPPEVLVLEGTLARMGQTYAYRLYPKGRRPLDPKDPGERSVLSALARRLLQERLR 
         :                                                                                                                          
 3dlb(A) : HLGKTEVFLNRFALRPLNPEELRPWRLEVVLDPPPGREEVYPLLAQVARRAGGVTVRMGDGLASWSPPEVLVLEGTLARMGQTYAYRLYPKGRRPLDPKDPGERSVLSALARRLLQERLR 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________174____________________________________________________________________ 
 3hjf(A) : RLEGVWVEGLAVYRREHARGPGWRVLGGAVLDLWVSDSGAFLLEVDPAYRILCEMSLEAWLAQGHPLPKRVRNAYDRRTWELLRLGEEDPKE-----gLSLLDYHASKGRLQGREGGRVA 
         :                                                                                                                          
 3dlb(A) : RLEGVWVEGLAVYRREHARGPGWRVLGGAVLDLWVSDSGAFLLEVDPAYRILCEMSLEAWLAQGHPLPKRVRNAYDRRTWELLRLGEEDPKELPLPGGLSLLDYHASKGRLQGREGGRVA 
           _________________________________________________174____________________________________________________________________ 

           ____________________265_____________________________________308_________________________________________________________ 
 3hjf(A) : WVADPKDPRKPIPHLTGLLVPVLTLEDl------SLPWEERRRRTREIASWIGRRLGLGTPEAVRAQAYRLSIPKLMGRRAVSKPADALRVGFYRAQETALALLRLDGAQGWPEFLRRAL 
         :                                                                                                                          
 3dlb(A) : WVADPKDPRKPIPHLTGLLVPVLTLEDLHEsLALSLPWEERRRRTREIASWIGRRLGLGTPEAVRAQAYRLSIPKLMGRRAVSKPADALRVGFYRAQETALALLRLDGAQGWPEFLRRAL 
           ____________________265_____________________________________308_________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3hjf(A) : LRAFGASGASLRLHTLHAHPSQGLAFREALRKAKEEGVQAVLVLTPPMAWEDRNRLKALLLREGLPSQILNVPLREEERHRWENALLGLLAKAGLQVVALSGAYPAELAVGFDAGGRESF 
         :                                                                                                                          
 3dlb(A) : LRAFGASGASLRLHTLHAHPSQGLAFREALRKAKEEGVQAVLVLTPPMAWEDRNRLKALLLREGLPSQILNVPLREEERHRWENALLGLLAKAGLQVVALSGAYPAELAVGFDAGGRESF 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3hjf(A) : RFGGAACAVGGDGGHLLWTLPEAQAGERIPQEVVWDLLEETLWAFRRKAGRLPSRVLLLREGRVPQDEFALALEALAREGIAYDLVSVRKSGGGRVYPVQGRLADGLYVPLEDKTFLLLT 
         :                                                                                                                          
 3dlb(A) : RFGGAACAVGGDGGHLLWTLPEAQAGERIPQEVVWDLLEETLWAFRRKAGRLPSRVLLLRDGRVPQDEFALALEALAREGIAYDLVSVRKSGGGRVYPVQGRLADGLYVPLEDKTFLLLT 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________                                         
 3hjf(A) : V----rGTPRPLKLVHEAGDTPLEALAHQIFHLTRLYPASGFAFPRLPAPLHLADRLVKEVGRLGIRHLKEVDREKLFFV                                         
         :                                                                                                                          
 3dlb(A) : VHRDFRGTPRPLKLVHEAGDTPLEALAHQIFHLTRLY*******************************************                                         
           ________________________________________________________________________________                                         

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
24.6
Translation
(A)
-1.3
Closure
(%)
85.3
Bending Residues
( green )
  174 - 178
  265 - 269
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
17.3
Translation
(A)
-1.6
Closure
(%)
97.8
Bending Residues
( green )
  308 - 315
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Shear

PyMOL Script

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