Aspartate Carbamoyltransferase (Aspartate Transcarbamylase) 3 (T State) (E.C.2.1.3.2)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Aspartate Carbamoyltransferase (Aspartate Transcarbamylase) 3 (T State) (E.C.2.1.3.2)
  Conformer 1
(PDB)
1d09 (A)
  Conformer 2
(PDB)
1za1 (A)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 277 1.25   7 - 226   248 - 304
2 21 2.86   227 - 247

Sequence


           ________________________________________________________________________________________________________________________ 
 1d09(A) : ANPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSG 
         :                                                                                                                          
 1za1(A) : ANPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSG 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________________________________________________________226______________ 
 1d09(A) : NVPVLNAGDGSNQHPTQTLLDLFTIQQTQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPEYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSEY 
         :                                                                                                                          
 1za1(A) : NVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSEY 
           _______________________________________________________________________________________________________226______________ 

           ____247_______________________________________________________________                                                   
 1d09(A) : ANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVLNRDLVL                                                   
         :                                                                                                                          
 1za1(A) : ANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVLNRDLVL                                                   
           ____247_______________________________________________________________                                                   

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
30.4
Translation
(A)
-2.0
Closure
(%)
92.0
Bending Residues
( green )
  226 - 227
  247 - 249
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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