Atp-Dependent RNA Helicase Ddx3x

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Atp-Dependent RNA Helicase Ddx3x
  Conformer 1
(PDB)
5e7i (A)
  Conformer 2
(PDB)
2i4i (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 236 2.12   169 - 412
2 161 0.67   413 - 575

Sequence


           ________________________________________________________________________________________________________________________ 
 5e7i(A) : DDWSKPLPPSERLEQELFSGdDIPVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE----gRR 
         :                                                                                                                          
 2i4i(A) : ***********************MVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRR 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 5e7i(A) : KQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSA 
         :                                                                                                                          
 2i4i(A) : KQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSA 
           ________________________________________________________________________________________________________________________ 

           ___________________405__________________________________________________________________________________________________ 
 5e7i(A) : TFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAAR 
         :                                                                                                                          
 2i4i(A) : TFPKEIQMLARDFLDEYIFLAVG----tSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAAR 
           ___________________405__________________________________________________________________________________________________ 

           _____________________________________________________________________________                                            
 5e7i(A) : GLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAYE***                                            
         :                                                                                                                          
 2i4i(A) : GLDISNVKHVINFDLPSDIEEYVHRIGRTGR--nLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAYEHHY                                            
           _____________________________________________________________________________                                            

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
179.2
Translation
(A)
8.6
Closure
(%)
47.8
Bending Residues
( green )
  405 - 415
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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