Bacteriophytochrome Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Bacteriophytochrome Protein
  Conformer 1
(PDB)
5i5l (A)
  Conformer 2
(PDB)
5hsq (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 313 0.63   21 - 307   443 - 470
2 163 1.09   308 - 442   471 - 500

Sequence


           ________________________________________________________________________________________________________________________ 
 5i5l(A) : **SCGAEPIHIPGAIQEHGALLVLSAREFSVVQASDNLANYIGVDLPIGAVATEANLPFISVLSAWYSGEESNFRYAWAEKKLDVSAHRSGTLVILEVEKAGVGESAEKLMGELTSLAKY 
         :                                                                                                                          
 5hsq(A) : LDSCGAEPIHIPGAIQEHGALLVLSAREFSVVQASDNLANYIGVDLPIGAVATEANLPFISVLSAWYSGAASNFRYAWAEKKLDVSAHRSGTLVILEVEKAGVGESAEKLMGELTSLAKY 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 5i5l(A) : LNSAPSLEDALFRTAQLVSSISGHDRTLIYDFGLDWSGHVVAEAGSGALPSYLGLRFPAGDIPPQARQLYTINRLRMIPDVDYKPVPIRPEVNAETGAVLDMSFSQLRSVSPVHLEYMRN 
         :                                                                                                                          
 5hsq(A) : LNSAPSLEDALFRTAQLVSSISGHDRTLIYDFGLDWSGHVVAEAGSGALPSYLGLRFPAGDIPPQARQLYTINRLRMIPDVDYKPVPIRPEVNAETGAVLDMSFSQLRSVSPVHLEYMRN 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________307_____________________________________________________________________ 
 5i5l(A) : MGTAASMSVSIVVNGALWGLIACHHATPHSVSLAVREACDFAAQLLSMRIAMEQSSQDASRRVELGHIQARLLKGMAAAEKWVDGLLGGEGEREDLLKQVGADGAALVLGDDYELVGNTP 
         :                                                                                                                          
 5hsq(A) : MGTAASMSVSIVVNGALWGLIACHHATPHSVSLAVREACDFAAQLLSMRIAMEQSSQDASRRVELGHIQARLLKGMAAAAAWVDGLLGGEGEREDLLKQVGADGAALVLGDDYELVGNTP 
           ________________________________________________307_____________________________________________________________________ 

           _______________________________________________________________442________________________469___________________________ 
 5i5l(A) : SREQVEELILWLGEREIADVFATDNLAGNYPTAAAYASVASGIIAMRVSE--gSWLIWFRPEVIKTVRWGGDPHKTVQE--rIHPRKSFEIWKEQLRNTSFPWSEPELAAARELRGAIIG 
         :                                                                                                                          
 5hsq(A) : SREQVEELILWLGEREIADVFATDNLAGNYPTAAAYASVASGIIAMRVSELHGSWLIWFRPEVIKTVRWGGDPHKTVQESGRIHPRKSFEIWKEQLRNTSFPWSEPELAAARELRGAIIG 
           _______________________________________________________________442________________________469___________________________ 

           ________                                                                                                                 
 5i5l(A) : IVLRKT**                                                                                                                 
         :                                                                                                                          
 5hsq(A) : IVLRKTEE                                                                                                                 
           ________                                                                                                                 

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
23.1
Translation
(A)
-1.1
Closure
(%)
99.9
Bending Residues
( green )
  307 - 308
  442 - 444
  469 - 471
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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