DynDom - Protein Domain Motions

Benzoylformate Decarboxylase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Benzoylformate Decarboxylase
Conformer 1 (PDB)	3fzn (A)
Conformer 2 (PDB)	2fwn (A)
Window Length	13
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	292	0.32	8 - 185 376 - 378 400 - 500 508 - 518
2	218	0.32	186 - 375 379 - 399 501 - 507

Sequence

`________________________________________________________________________________________________________________________` `3fzn(A) : ASVHGTTYELLRRQGIDTVFGNPGSNELPFLKDFPEDFRYILALQEACVVGIADGYAQASRKPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRP` `:` `2fwn(A) : ASVHGTTYELLRRQGIDTVFGNPG-nELPFLKDFPEDFRYILALQEACVVGIADGYAQASRKPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRP` `________________________________________________________________________________________________________________________` `_____________________________________________________________185________________________________________________________` `3fzn(A) : LVKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHHLFDRHVSSSVRLNDQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPSAPRCP` `:` `2fwn(A) : LVKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHHLFDRHVSSSVRLNDQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPSAPRCP` `_____________________________________________________________185________________________________________________________` `________________________________________________________________________________________________________________________` `3fzn(A) : FPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTRLISVTCDPLEAARAPMGDAIVADIGAMASALANLVEESSRQLPTAAPEPAKVDQDAGRLHPETVFDT` `:` `2fwn(A) : FPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTRLISVTCDPLEAARAPMGDAIVADIGAMASALANLVEESSRQLPTAAPEPAKVDQDAGRLHPETVFDT` `________________________________________________________________________________________________________________________` `___________375_____________________399__________________________________________________________________________________` `3fzn(A) : LNDMAPENAIYLNESTSTTAQMWQRLNMRNPGSYYFCAAGGLGFALPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGTYGALRWFAGVLEAENVPGLDVPGI` `:` `2fwn(A) : LNDMAPENAIYLNESTSTTAQMWQRLNMRNPGSYYFCAAGGLGFALPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGTYGALRWFAGVLEAENVPGLDVPGI` `___________375_____________________399__________________________________________________________________________________` `____________496________507__________________` `3fzn(A) : DFRALAKGYGVQALKADNLEQLKGSLQEALSAKGPVLIEVSTV*` `:` `2fwn(A) : DFRALAKGYGVQALKADNLEQLKGSLQEALSAKGPVLIEVSTVS` `____________496________507__________________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	1.3
Translation (A)	0.1
Closure (%)	99.9
Bending Residues ( green )	185 - 186 375 - 376 378 - 379 399 - 404 496 - 501 507 - 508
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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