Caffeic Acid O-Methyltransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Caffeic Acid O-Methyltransferase
  Conformer 1
(PDB)
4pgg (A)
  Conformer 2
(PDB)
4pgg (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 186 0.58   5 - 180   183 - 185   311 - 317
2 170 0.42   181 - 182   186 - 310   318 - 360

Sequence


           ________________________________________________________________________________________________________________________ 
 4pgg(A) : ATAEDVAAVADEEACMYAMQLASSSILPMTLKNALELGLLEVLQKDAGKALAAEEVVARLPVAPTNPAAADMVDRMLRLLASYDVVKCQMEDKDGKYERRYSAAPVGKWLTPNEDGVSMA 
         :                                                                                                                          
 4pgg(B) : ATAEDVAAVADEEACMYAMQLASSSILPMTLKNALELGLLEVLQKDAGKALAAEEVVARLPVAPTNPAAADMVDRMLRLLASYDVVKCQMEDKDGKYERRYSAAPVGKWLTPNEDGVSMA 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________180__185_________________________________________________________ 
 4pgg(A) : ALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNRVFNEGMKNHSVIITKKLLEFYTGFDESVSTLVDVGGGIGATLHAITSHHSHIRGVNFDLPHVISEAPPFPG 
         :                                                                                                                          
 4pgg(B) : ALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNRVFNEGMKNHSVIITKKLLEFYTGFDESVSTLVDVGGGIGATLHAITSHHSHIRGVNFDLPHVISEAPPFPG 
           _______________________________________________________180__185_________________________________________________________ 

           _________________________________________________________________310____317_____________________________________________ 
 4pgg(A) : VQHVGGDMFKSVPAGDAILMKWILHDWSDAHCATLLKNCYDALPEKGGKVIVVECVLPVTTDAVPKAQGVFHVDMIMLAHNPGGRERYEREFRDLAKAAGFSGFKATYIYANAWAIEFIK 
         :                                                                                                                          
 4pgg(B) : VQHVGGDMFKSVPAGDAILMKWILHDWSDAHCATLLKNCYDALPEKGGKVIVVECVLPVTTDAVPKAQGVFHVDMIMLAHNPGGRERYEREFRDLAKAAGFSGFKATYIYANAWAIEFIK 
           _________________________________________________________________310____317_____________________________________________ 

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
4.4
Translation
(A)
0.0
Closure
(%)
89.2
Bending Residues
( green )
  180 - 183
  185 - 186
  310 - 311
  317 - 318
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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