Caffeic Acid O-Methyltransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Caffeic Acid O-Methyltransferase
  Conformer 1
(PDB) 		4pgh (C)
  Conformer 2
(PDB) 		4pgg (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 186 0.49   12 - 178   300 - 300   305 - 320   327 - 328
2 163 0.51   179 - 299   301 - 304   321 - 326   329 - 360

Sequence


           ________________________________________________________________________________________________________________________ 
 4pgh(C) : *******AVADEEACMYAMQLASSSILPMTLKNALELGLLEVLQKDAGKALAAEEVVARLPVAPTNPAAADMVDRMLRLLASYDVVKCQMEDKDGKYERRYSAAPVGKWLTPNEDGVSMA 
         :                                                                                                                          
 4pgg(A) : ATAEDVAAVADEEACMYAMQLASSSILPMTLKNALELGLLEVLQKDAGKALAAEEVVARLPVAPTNPAAADMVDRMLRLLASYDVVKCQMEDKDGKYERRYSAAPVGKWLTPNEDGVSMA 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________178________________________________________________________________ 
 4pgh(C) : ALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNRVFNEGMKNHSVIITKKLLEFYTGFDESVSTLVDVGGGIGATLHAITSHHSHIRGVNFDLPHVISEAPPFPG 
         :                                                                                                                          
 4pgg(A) : ALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNRVFNEGMKNHSVIITKKLLEFYTGFDESVSTLVDVGGGIGATLHAITSHHSHIRGVNFDLPHVISEAPPFPG 
           _____________________________________________________178________________________________________________________________ 

           ______________________________________________________299_303______________320__________________________________________ 
 4pgh(C) : VQHVGGDMFKSVPAGDAILMKWILHDWSDAHCATLLKNCYDALPEKGGKVIVVECVLPVTTDAVPKAQGVFHVDMIMLAHNPGGRERYEREFRDLAKAAGFSGFKATYIYANAWAIEFIK 
         :                                                                                                                          
 4pgg(A) : VQHVGGDMFKSVPAGDAILMKWILHDWSDAHCATLLKNCYDALPEKGGKVIVVECVLPVTTDAVPKAQGVFHVDMIMLAHNPGGRERYEREFRDLAKAAGFSGFKATYIYANAWAIEFIK 
           ______________________________________________________299_303______________320__________________________________________ 

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		5.1
Translation
(A) 		0.1
Closure
(%) 		64.5
Bending Residues
( green ) 		  178 - 179
  299 - 301
  303 - 305
  320 - 329
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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