Calmodulin Cmd-1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin Cmd-1
  Conformer 1
(PDB)
1ooj (A)
  Conformer 2
(PDB)
1qx5 (T)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 38 4.01   80 - 117
2 72 4.4   8 - 79
3 27 3.59   118 - 144

Sequence


           __________________________________________________________________________78_________________________________114________ 
 1ooj(A) : ***TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEV 
         :                                                                                                                          
 1qx5(T) : DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEV 
           __________________________________________________________________________77_________________________________113________ 

           _________________________                                                                                                
 1ooj(A) : DEMIREADIDGDGQVNYEEFVTMM*                                                                                                
         :                                                                                                                          
 1qx5(T) : DEMIREADIDGDGQVNYEEFVQMMT                                                                                                
           _________________________                                                                                                

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
128.8
Translation
(A)
-10.5
Closure
(%)
98.3
Bending Residues
( green )
  78 - 80
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
157.6
Translation
(A)
-6.1
Closure
(%)
99.9
Bending Residues
( green )
  114 - 118
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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