Calmodulin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin
  Conformer 1
(PDB) 		5k8q (A)
  Conformer 2
(PDB) 		2f2o (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 71 1.09   7 - 77
2 63 0.82   81 - 145

Sequence


           ______________________________________________________________________73________________________________________________ 
 5k8q(A) : DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMK---sEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEV 
         :                                                                                                                          
 2f2o(A) : ***TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNL--kLTDEEV 
           ______________________________________________________________________73________________________________________________ 

           _________________________________________                                                                                
 5k8q(A) : DEMIREADIDGDGQVNYEEFVQMMTA***************                                                                                
         :                                                                                                                          
 2f2o(A) : DEMIREADIDGDGQVNYEEFVQMMTAiRNKIRAIGKMARVF                                                                                
           _________________________________________                                                                                

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		168.5
Translation
(A) 		-6.4
Closure
(%) 		92.7
Bending Residues
( green ) 		  73 - 82
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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