Calmodulin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin
  Conformer 1
(PDB)
1g4y (R)
  Conformer 2
(PDB)
1k90 (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 72 4.24   7 - 78
2 67 2.85   79 - 145

Sequence


           ____________________________________________________________________________78__________________________________________ 
 1g4y(R) : ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEE 
         :                                                                                                                          
 1k90(D) : ****TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEE 
           ____________________________________________________________________________78__________________________________________ 

           ___________________________                                                                                              
 1g4y(R) : VDEMIREADIDGDGQVNYEEFVQMMTA                                                                                              
         :                                                                                                                          
 1k90(D) : VDEMIREADIDGDGQVNYEEFVQMMTA                                                                                              
           ___________________________                                                                                              

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
142.2
Translation
(A)
2.6
Closure
(%)
33.1
Bending Residues
( green )
  78 - 79
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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