Calmodulin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin
  Conformer 1
(PDB)
5k8q (A)
  Conformer 2
(PDB)
1cff (A)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 100 10.22   7 - 85   93 - 104   127 - 138
2 33 1.57   86 - 92   105 - 126   139 - 142

Sequence


           _______________________________________________________________________73_________________92_________104________________ 
 5k8q(A) : *DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMK---sEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEE 
         :                                                                                                                          
 1cff(A) : ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEE 
           _______________________________________________________________________73_________________92_________104________________ 

           __125__________138__________                                                                                             
 5k8q(A) : VDEMIREADIDGDGQVNYEEFVQMMTA*                                                                                             
         :                                                                                                                          
 1cff(A) : VDEMIREADIDGDGQVNYEEFVQMMTAK                                                                                             
           __125__________138__________                                                                                             

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
172.6
Translation
(A)
3.8
Closure
(%)
99.7
Bending Residues
( green )
  73 - 86
  92 - 96
  104 - 105
  125 - 127
  138 - 139
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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