Calmodulin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin
  Conformer 1
(PDB)
5k8q (A)
  Conformer 2
(PDB)
1xfx (O)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 68 3.69   72 - 144
2 65 3.96   5 - 71

Sequence


           ___________________________________________________________________70___________________________________________________ 
 5k8q(A) : DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKsEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEM 
         :                                                                                                                          
 1xfx(O) : *QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTV-rSLGQNPTEAELQD-iNEVDADGNGTIDFPEFLTaRKkDTDSEEEIREAFRVFDKDGNGYISAAELRHV-tNLGEKLTDEEVDQ- 
           ___________________________________________________________________70___________________________________________________ 

           _______________________                                                                                                  
 5k8q(A) : IREADIDGDGQVNYEEFVQMMTA                                                                                                  
         :                                                                                                                          
 1xfx(O) : iREADIDGDGQVNYEEFVQtAK*                                                                                                  
           _______________________                                                                                                  

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
176.7
Translation
(A)
7.9
Closure
(%)
85.1
Bending Residues
( green )
  70 - 82
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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