Calmodulin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin
  Conformer 1
(PDB) 		5k8q (A)
  Conformer 2
(PDB) 		2f2o (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 72 1.12   6 - 77
2 59 0.95   81 - 145

Sequence


           _____________________________________________________________________72_________________________________________________ 
 5k8q(A) : DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMK---sEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEV 
         :                                                                                                                          
 2f2o(B) : **LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGE------v 
           _____________________________________________________________________72_________________________________________________ 

           _______________________________________________                                                                          
 5k8q(A) : DEMIREADIDGDGQVNYEEFVQMMTA*********************                                                                          
         :                                                                                                                          
 2f2o(B) : DEMIREADIDGDGQVNYEEFVQMMTAaRKEVIRNKIRAIGKMARVFS                                                                          
           _______________________________________________                                                                          

Morph
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		161.1
Translation
(A) 		-6.1
Closure
(%) 		91.8
Bending Residues
( green ) 		  72 - 82
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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